No. That is not whats wanted. Files copied will be shown even if Insync isn't running.
Insync must be able to sync files by using a common configuration file in all Operating systems. So that the sync can be done in both Windows as well as Linux.
RIght now, since Linux is my primary OS, I boot into Linux when I want to sync changes to drive but since I have my work in Windows I boot back into windows, make changes and reboot to Linux to upload the changes.